Vasilis J. Promponas: search on Z-Library

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1

Clustering of biological time series by cepstral coefficients based distances

Alexios Savvides, Vasilis J. Promponas, Konstantinos Fokianos

Journal:

Pattern Recognition

Year:

2008

Language:

english

File:

PDF, 237 KB

english, 2008

2

Learning supervised embeddings for large scale sequence comparisons

Kimothi, Dhananjay, Biyani, Pravesh, Hogan, James M., Soni, Akshay, Kelly, Wayne, Promponas, Vasilis J

Journal:

Year:

2020

Language:

english

File:

PDF, 2.77 MB

english, 2020

3

The Chlamydiales Pangenome Revisited: Structural Stability and Functional Coherence

Psomopoulos, Fotis E., Siarkou, Victoria I., Papanikolaou, Nikolas, Iliopoulos, Ioannis, Tsaftaris, Athanasios S., Promponas, Vasilis J., Ouzounis, Christos A.

Journal:

Year:

2012

Language:

english

File:

PDF, 497 KB

english, 2012

4

A Crucial Role in Fertility for the Oyster Angiotensin-Converting Enzyme Orthologue CgACE

Riviere, Guillaume, Fellous, Alexandre, Franco, Alban, Bernay, Benoit, Favrel, Pascal, Promponas, Vasilis J.

Journal:

Year:

2011

Language:

english

File:

PDF, 1.25 MB

english, 2011

5

Development of an ELISA for the quantification of the C-terminal decapeptide prothymosin α(100–109) in sera of mice infected with bacteria

Samara, Pinelopi, Kalbacher, Hubert, Ioannou, Kyriaki, Radu, Dorel L., Livaniou, Evangelia, Promponas, Vasilis J., Voelter, Wolfgang, Tsitsilonis, Ourania

Journal:

Journal of Immunological Methods

Year:

2013

Language:

english

File:

PDF, 662 KB

english, 2013

6

[IEEE 2012 IEEE 12th International Conference on Bioinformatics & Bioengineering (BIBE) - Larnaca, Cyprus (2012.11.11-2012.11.13)] 2012 IEEE 12th International Conference on Bioinformatics & Bioengineering (BIBE) - Sequence features of Compositionally Biased regions in three dimensional protein structures

Tamana, Stella, Kirmitzoglou, Ioannis, Promponas, Vasilis J.

Year:

2012

Language:

english

File:

PDF, 415 KB

english, 2012

7

Assessing the impact of introductory programming workshops on the computational reproducibility of biomedical workflows

Deardorff, Ariel, Promponas, Vasilis J.

Journal:

Year:

2020

File:

PDF, 374 KB

2020

8

FPGA-based hardware acceleration for local complexity analysis of massive genomic data

Papadopoulos, Agathoklis, Kirmitzoglou, Ioannis, Promponas, Vasilis J., Theocharides, Theocharis

Journal:

Integration, the VLSI Journal

Year:

2013

Language:

english

File:

PDF, 1004 KB

english, 2013

9

[IEEE 2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) - Osaka (2013.7.3-2013.7.7)] 2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) - GPU technology as a platform for accelerating local complexity analysis of protein sequences

Papadopoulos, Agathoklis, Kirmitzoglou, Ioannis, Promponas, Vasilis J., Theocharides, Theocharis

Year:

2013

Language:

english

File:

PDF, 238 KB

english, 2013

10

H3ABioNet computational metagenomics workshop in Mauritius: training to analyse microbial diversity for Africa

Baichoo, Shakuntala, Botha, Gerrit, Jaufeerally-Fakim, Yasmina, Mungloo-Dilmohamud, Zahra, Lundin, Daniel, Mulder, Nicola, Promponas, Vasilis J., Ouzounis, Christos A.

Journal:

Standards in Genomic Sciences

Year:

2015

Language:

english

File:

PDF, 607 KB

english, 2015

11

Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases

Tørresen, Ole K, Star, Bastiaan, Mier, Pablo, Andrade-Navarro, Miguel A, Bateman, Alex, Jarnot, Patryk, Gruca, Aleksandra, Grynberg, Marcin, Kajava, Andrey V, Promponas, Vasilis J, Anisimova, Maria, J

Journal:

Nucleic Acids Research

Year:

2019

File:

PDF, 914 KB

2019

12

The bioinformatics wealth of nations

Chasapi, Anastasia, Promponas, Vasilis J, Ouzounis, Christos A, Wren, Jonathan

Journal:

Year:

2020

File:

PDF, 541 KB

2020

13

Territorial dynamics of Mexican Ant-thrushes Formicarius moniliger revealed by individual recognition of their songs

ALEXANDER N. G. KIRSCHEL, MARTIN L. CODY, ZACHARY T. HARLOW, VASILIS J. PROMPONAS, EDGAR E. VALLEJO, CHARLES E. TAYLOR

Journal:

Year:

2011

Language:

english

File:

PDF, 946 KB

english, 2011

14

[ACM Press the great lakes symposium - Salt Lake City, Utah, USA (2012.05.03-2012.05.04)] Proceedings of the great lakes symposium on VLSI - GLSVLSI '12 - Towards systolic hardware acceleration for local complexity analysis of massive genomic data

Papadopoulos, Agathoklis, Promponas, Vasilis J., Theocharides, Theocharis

Year:

2012

Language:

english

File:

PDF, 1.94 MB

english, 2012

15

Improved Detection of Remote Homologues Using Cascade PSI-BLAST: Influence of Neighbouring Protein Families on Sequence Coverage

Kaushik, Swati, Mutt, Eshita, Chellappan, Ajithavalli, Sankaran, Sandhya, Srinivasan, Narayanaswamy, Sowdhamini, Ramanathan, Promponas, Vasilis J.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.76 MB

english, 2013

16

Insect Innate Immunity Database (IIID): An Annotation Tool for Identifying Immune Genes in Insect Genomes

Brucker, Robert M., Funkhouser, Lisa J., Setia, Shefali, Pauly, Rini, Bordenstein, Seth R., Promponas, Vasilis J.

Journal:

Year:

2012

Language:

english

File:

PDF, 87 KB

english, 2012

17

aPPRove: An HMM-Based Method for Accurate Prediction of RNA-Pentatricopeptide Repeat Protein Binding Events

Harrison, Thomas, Ruiz, Jaime, Sloan, Daniel B., Ben-Hur, Asa, Boucher, Christina, Promponas, Vasilis J

Journal:

Year:

2016

Language:

english

File:

PDF, 1.23 MB

english, 2016

18

Spectral density ratio based clustering methods for the binary segmentation of protein sequences: A comparative study

Alexis Ioannou, Konstantinos Fokianos, Vasilis J. Promponas

Journal:

Year:

2010

Language:

english

File:

PDF, 1.00 MB

english, 2010

19

Functional characterisation of long intergenic non-coding RNAs through genetic interaction profiling inSaccharomyces cerevisiae

Kyriakou, Dimitris, Stavrou, Emmanouil, Demosthenous, Panayiota, Angelidou, Georgia, San Luis, Bryan-Joseph, Boone, Charles, Promponas, Vasilis J., Kirmizis, Antonis

Journal:

Year:

2016

Language:

english

File:

PDF, 1.21 MB

english, 2016

20

Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases

Tørresen, Ole K, Star, Bastiaan, Mier, Pablo, Andrade-Navarro, Miguel A, Bateman, Alex, Jarnot, Patryk, Gruca, Aleksandra, Grynberg, Marcin, Kajava, Andrey V, Promponas, Vasilis J, Anisimova, Maria, J

Journal:

Nucleic Acids Research

Year:

2019

Language:

english

File:

PDF, 914 KB

english, 2019

21

GeneViTo: Visualizing gene-product functional and structural features in genomic datasets

Georgios S Vernikos, Christos G Gkogkas, Vasilis J Promponas, Stavros J Hamodrakas

Journal:

BMC Bioinformatics

Year:

2003

Language:

english

File:

PDF, 1.21 MB

english, 2003

22

[IEEE 2012 IEEE 12th International Conference on Bioinformatics & Bioengineering (BIBE) - Larnaca, Cyprus (2012.11.11-2012.11.13)] 2012 IEEE 12th International Conference on Bioinformatics & Bioengineering (BIBE) - Opportunities from the use of FPGAs as platforms for bioinformatics algorithms

Chrysos, Grigorios, Sotiriades, Euripides, Rousopoulos, Christos, Dollas, Apostolos, Papadopoulos, Agathoklis, Kirmitzoglou, Ioannis, Promponas, Vasilis, Theocharides, Theocharis, Petihakis, George, L

Year:

2012

Language:

english

File:

PDF, 385 KB

english, 2012

23

The Interaction Properties of the Human Rab GTPase Family – A Comparative Analysis Reveals Determinants of Molecular Binding Selectivity

Stein, Matthias, Pilli, Manohar, Bernauer, Sabine, Habermann, Bianca H., Zerial, Marino, Wade, Rebecca C., Promponas, Vasilis J.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.02 MB

english, 2012

24

An updated view of the oligosaccharyltransferase complex in Plasmodium

Tamana, Stella, Promponas, Vasilis J

Journal:

Year:

2019

Language:

english

File:

PDF, 9.89 MB

english, 2019

25

Gene socialization: gene order, GC content and gene silencing inSalmonella

Nikolas Papanikolaou, Kalliopi Trachana, Theodosios Theodosiou, Vasilis J Promponas, Ioannis Iliopoulos

Journal:

Year:

2009

Language:

english

File:

PDF, 544 KB

english, 2009

26

Facilitating reproducible project management and manuscript development in team science: The projects R package

Krieger, Nikolas I., Perzynski, Adam T., Dalton, Jarrod E., Promponas, Vasilis J.

Journal:

Year:

2019

Language:

english

File:

PDF, 784 KB

english, 2019

27

Reproducibility in genome sequence annotation: the Plasmodium falciparum chromosome 2 case

Sophia Tsoka, Vasilis Promponas, Christos A. Ouzounis

Journal:

Year:

1999

Language:

english

File:

PDF, 107 KB

english, 1999

28

Reconfiguring the Bioinformatics Computational Spectrum: Challenges and Opportunities of FPGA-Based Bioinformatics Acceleration Platforms

Chrysos, Grigorios, Sotiriades, Euripides, Rousopoulos, Christos, Pramataris, Kostas, Papaefstathiou, Ioannis, Dollas, Apostolos, Papadopoulos, Agathoklis, Kirmitzoglou, Ioannis, Promponas, Vasilis J.

Journal:

IEEE Design and Test

Year:

2014

Language:

english

File:

PDF, 904 KB

english, 2014

29

Increasing Sequence Search Sensitivity with Transitive Alignments

Malde, Ketil, Furmanek, Tomasz, Promponas, Vasilis J.

Journal:

Year:

2013

Language:

english

File:

PDF, 581 KB

english, 2013

30

Pseudomonas aeruginosa core metabolism exerts a widespread growth-independent control on virulence

Panayidou, Stavria, Georgiades, Kaliopi, Christofi, Theodoulakis, Tamana, Stella, Promponas, Vasilis J., Apidianakis, Yiorgos

Journal:

Scientific Reports

Year:

2020

File:

PDF, 4.71 MB

2020

31

SAS-Pro: Simultaneous Residue Assignment and Structure Superposition for Protein Structure Alignment

Shah, Shweta B., Sahinidis, Nikolaos V., Promponas, Vasilis J.

Journal:

Year:

2012

Language:

english

File:

PDF, 502 KB

english, 2012

32

Protein Fragments: Functional and Structural Roles of Their Coevolution Networks

Dib, Linda, Carbone, Alessandra, Promponas, Vasilis J.

Journal:

Year:

2012

Language:

english

File:

PDF, 3.77 MB

english, 2012

33

Characterizing Vocal Repertoires—Hard vs. Soft Classification Approaches

Wadewitz, Philip, Hammerschmidt, Kurt, Battaglia, Demian, Witt, Annette, Wolf, Fred, Fischer, Julia, Promponas, Vasilis J

Journal:

Year:

2015

Language:

english

File:

PDF, 633 KB

english, 2015

34

iLIR database: a web resource for LIR motif-containing proteins in eukaryotes

Jacomin, Anne-Claire, Samavedam, Siva, Promponas, Vasilis, Nezis, Ioannis P.

Journal:

Year:

2016

Language:

english

File:

PDF, 1.62 MB

english, 2016

35

The L motifs of two moss pentatricopeptide repeat proteins are involved in RNA editing but predominantly not in RNA recognition

Matsuda, Takuya, Sugita, Mamoru, Ichinose, Mizuho, Promponas, Vasilis J.

Journal:

Year:

2020

File:

PDF, 2.15 MB

2020

36

Combining signal and sequence to detect RNA polymerase initiation in ATAC-seq data

Tripodi, Ignacio J., Chowdhury, Murad, Gruca, Margaret, Dowell, Robin D., Promponas, Vasilis J

Journal:

Year:

2020

File:

PDF, 3.91 MB

2020

37

iLIR

Kalvari, Ioanna, Tsompanis, Stelios, Mulakkal, Nitha C, Osgood, Richard, Johansen, Terje, Nezis, Ioannis P, Promponas, Vasilis J

Journal:

Year:

2014

Language:

english

File:

PDF, 934 KB

english, 2014

38

Biological applications of time series frequency domain clustering

Konstantinos Fokianos, Vasilis J. Promponas

Journal:

Journal of Time Series Analysis

Year:

2012

Language:

english

File:

PDF, 382 KB

english, 2012

39

[IEEE 2009 9th International Conference on Information Technology and Applications in Biomedicine (ITAB 2009) - Larnaka, Cyprus (2009.11.4-2009.11.7)] 2009 9th International Conference on Information Technology and Applications in Biomedicine - A simple clustering approach for pathogenic strain identification based on local and global amino acid compositional signatures from enomic sequences: the Escherichia genus case

Promponas, Vasilis J.

Year:

2009

Language:

english

File:

PDF, 1.22 MB

english, 2009

40

Origins and Evolution of the HET-s Prion-Forming Protein: Searching for Other Amyloid-Forming Solenoids

Gendoo, Deena M. A., Harrison, Paul M., Promponas, Vasilis J.

Journal:

Year:

2011

Language:

english

File:

PDF, 2.76 MB

english, 2011

41

Editorial: Intelligent Biomedical Systems

Kyriacou, Efthyvoulos C., Promponas, Vasilis J., Maglogiannis, Ilias, Schizas, Christos N., Pattichis, Constantinos S.

Journal:

International Journal of Artificial Intelligence Tools

Year:

2014

Language:

english

File:

PDF, 91 KB

english, 2014

42

Annotation inconsistencies beyond sequence similarity-based function prediction – phylogeny and genome structure

Promponas, Vasilis J., Iliopoulos, Ioannis, Ouzounis, Christos A.

Journal:

Standards in Genomic Sciences

Year:

2015

Language:

english

File:

PDF, 652 KB

english, 2015

43

A Machine Learning Approach to Identify Clinical Trials Involving Nanodrugs and Nanodevices from ClinicalTrials.gov

de la Iglesia, Diana, García-Remesal, Miguel, Anguita, Alberto, Muñoz-Mármol, Miguel, Kulikowski, Casimir, Maojo, Víctor, Promponas, Vasilis J.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.33 MB

english, 2014

44

Recognition of LD motifs by the Focal Adhesion Targeting Domains of FAK and PYK2 : Insights from Molecular Dynamics Simulations

Michael, Eleni, Polydorides, Savvas, Promponas, Vasilis J., Skourides, Paris, Archontis, Georgios

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2020

File:

PDF, 9.01 MB

2020

45

MEETING REPORT: THE SEVENTH CONFERENCE OF THE HELLENIC SOCIETY FOR COMPUTATIONAL BIOLOGY AND BIOINFORMATICS

Hamodrakas, Stavros J, Iliopoulos, Ioannis, Ouzounis, Christos A, Bagos, Pantelis G, Promponas, Vasilis J

Journal:

Computational and Structural Biotechnology Journal

Year:

2013

Language:

english

File:

PDF, 469 KB

english, 2013

46

Guest Editorial: Computational Solutions to Large-Scale Data Management and Analysis in Translational and Personalized Medicine

Tsiknakis, Manolis, Promponas, Vasilis J., Graf, Norbert, Wang, May D., Wong, Stephen T. C., Bourbakis, Nikolaos, Pattichis, Constantinos S.

Journal:

IEEE Journal of Biomedical and Health Informatics

Year:

2014

Language:

english

File:

PDF, 78 KB

english, 2014

47

Functional Genomics Evidence Unearths New Moonlighting Roles of Outer Ring Coat Nucleoporins

Katsani, Katerina R., Irimia, Manuel, Karapiperis, Christos, Scouras, Zacharias G., Blencowe, Benjamin J., Promponas, Vasilis J., Ouzounis, Christos A.

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 1.53 MB

english, 2015

48

Evolutionary Study of Disorder in Protein Sequences

Kastano, Kristina, ErdÅs, GÃ¡bor, Mier, Pablo, Alanis-Lobato, Gregorio, Promponas, Vasilis J., DosztÃ¡nyi, Zsuzsanna, Andrade-Navarro, Miguel A.

Journal:

Year:

2020

File:

PDF, 6.15 MB

2020

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